Description of the options for the affy package.
说明选项为affy包。
注意----------Note----------
The affy package options are contained in the Bioconductor options. The options are:
affy封装选项都包含的Bioconductor选项。选项有:
use.widgets: a logical used to decide on the default of widget use.
use.widgets:用来决定默认的widget使用一个逻辑。
compress.cel: a logical
compress.cel:逻辑
compress.cdf: a logical
compress.cdf:逻辑
probes.loc: a list. Each element of the list is it self a list with two elements what and where. When looking for the informations about the locations of the probes on the array, the elements in the list will be looked at one after the other. The first one for which what and where lead to the matching locations information is used. The element what can be one of package, environment or file. The element where depends on the corresponding element what.
probes.loc:一个列表。列表中的每个元素是它的自我与两个元素在列表中。当阵列上的探针的位置信息,在列表中的元素将看着一前一后。第一个为哪些地方导致匹配的位置信息。元素可以是一个软件包,环境或文件。元素依赖于相应的元素。
if package: location for the package (like it would be for the argument lib.loc for the function library.)
如果包:包的位置(如将参数lib.loc功能library。)
if environment: an environment to look for the information (like the argument env for the function get).
如果环境:environment寻找的信息(如参数env函数get)。
if file: a character with the path in which a CDF file can be found.
如果文件:character可以发现其中一个CDF文件的路径。
举例----------Examples----------
## get the options[#选项]
opt <- getOption("BioC")
affy.opt <- opt$affy
## list their names[#列出他们的名字。]
names(affy.opt)
## set the option compress.cel[#设置选项compress.cel,]
affy.opt$compress.cel <- TRUE
options(BioC=opt)