TRAMPR-package(TRAMPR)
TRAMPR-package()所属R语言包：TRAMPR
The TRAMPR Package (TRFLP Analysis and Matching Package for R)
TRAMPR包装（TRFLP分析和匹配的包的R）
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This package contains a collection of functions to help analyse terminal restriction fragment length polymorphism (TRFLP) profiles, by matching unknown peaks to known TRFLP profiles in order to identify species.
这个套件包含了函数的集合，以帮助分析末端限制性片段长度的多态性（TRFLP）的配置文件，通过匹配未知峰称为TRFLP配置文件，以确定物种。
The TRAMPR package contains a vignette, which includes a worked example; type vignette("TRAMPRdemo") to view it. To see all documented help topics, type library(help=TRAMPR).
TRAMPR包中包含一个小插曲，其中包括一个工作的例子;类型vignette("TRAMPRdemo")查看它。要查看所有记录的帮助主题，类型library(help=TRAMPR)。
Details
详细信息----------Details----------
Start by reading the TRAMP (and perhaps create.diffsmatrix) help pages, which explain the matching algorithm.
先阅读TRAMP（也许create.diffsmatrix）帮助页面，这说明匹配算法。
Then read load.abi to learn how to load ABI format data into the program. Alternatively, read TRAMPsamples and read.TRAMPsamples to load already-processed data.
然后阅读load.abi学习如何ABI格式的数据加载到程序中。另外，读为TRAMPsamples和read.TRAMPsamples加载已经处理过的数据。
If you already have a collection of knowns, read TRAMPknowns and read.TRAMPknowns to learn how to load them. Otherwise, read build.knowns to learn how to automatically generate a set of known profiles from your data.
如果您已经有已知的集合，读为TRAMPknowns和read.TRAMPknowns学习如何加载它们。否则，读build.knowns学习如何从你的数据自动生成一组已知的配置文件。
Once your data are loaded, reread TRAMP to do the analysis, then read plot.TRAMP and summary.TRAMP to examine the analysis. update.TRAMP may also be useful for modifying your matches. summary.TRAMP is also useful for preparing presence/absence matrices for analysis with other tools (e.g. the vegan package; see the vignette indicated below).
一旦你的数据被加载，重读TRAMP做了分析，然后读plot.TRAMP和summary.TRAMP检查分析。 update.TRAMP修改你的比赛也可能是有用的。 summary.TRAMP也是有用的制备存在/不存在矩阵与其他的工具进行分析（例如vegan包;看到暗角如下所示）。
TRAMPR works with database-like objects, and a basic understanding of relational databases and primary/foreign keys will aid in understanding some aspects of the package.
TRAMPR的工作与数据库状物体，关系型数据库和主键/外键一个基本的了解，将有助于了解某些方面的包。
引用----------Citation----------
Please see citation("TRAMPR") for the citation of TRAMPR.
请参阅citation("TRAMPR")引用的TRAMPR的。
注意----------Note----------
TRAMPR is designed specifically for “database TRFLP” (identifying species based on a database of known TRFLP profiles: see Dicke et al. 2002. It is not designed for direct community analysis of TRFLP profiles as in peak-profile TRFLP.
TRAMPR是专门设计的为“数据库TRFLP”的（一个数据库已知TRFLP配置文件的基础上确定的物种：迪克等人，2002年，它是不适合作为峰轮廓TRFLP的社区直接分析TRFLP配置文件。
（作者）----------Author(s)----------
Rich FitzJohn and Ian Dickie, Landcare Research
参考文献----------References----------
polymorphism (T-RFLP) to identify mycorrhizal fungi; a methods review. Mycorrhiza 17: 259-270.
ectomycorrhizal hyphae in soil as shown by T-RFLP analysis. New Phytologist 156: 527-535.
matching of terminal-restriction fragment length polymorphism (TRFLP) profiles. Molecular Ecology Notes [doi:10.1111/j.1471-8286.2007.01744.x].
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-10-1 11:44:38
